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Getting from Agathonisi to Naxos

If you are heading to Naxos from Agathonisi you are making your way from the northern Dodecanese group to the largest island in the Cyclades, on the opposite side of the Aegean. It has a medieval Venetian town above the port, long sandy beaches on the west coast and a mountainous interior of marble villages.

 

Take the ferry

There is no direct ferry from Agathonisi to Naxos. Getting there means taking the local ferry from Agathonisi to Leros or Samos, flying to Athens and then taking the Piraeus to Naxos ferry, which takes around 3.5 to 5.5 hours with multiple daily departures in summer.

 

Getting there by air

Both Naxos and the nearest airports to Agathonisi have connections from Athens. Taking the local ferry from Agathonisi to Leros or Samos, flying to Athens and then Athens to Naxos, gives a total journey time of around 5 to 6 hours. In Greece, airlines do not operate direct inter island flights.

 

Your best option

Take the local ferry from Agathonisi to Leros or Samos and fly to Athens. From there you can either fly directly to Naxos or take the ferry from Piraeus. The ferry from Piraeus delivers you directly to the port in the centre of Naxos Town and is often more practical than the short flight when you factor in airport transfers.

Discover Activities and Tours

Book a Santorini Private Caldera Panoramic Highlights Tour

Private sightseeing tour in Santorini showcasing panoramic caldera views, whitewashed cliffside villages, blue-domed churches, and scenic viewpoints overlooking the Aegean Sea.

Book a Milos and Polyaigos Catamaran Cruise with Homemade BBQ and Drinks

Luxury catamaran sailing between Milos and Polyaigos with guests swimming in turquoise waters, snorkeling near sea caves, and enjoying a homemade BBQ meal while surrounded by dramatic island scenery.

Book a Naxos Half Day Island Highlights Tour

Travelers exploring traditional villages in Naxos with stone-paved streets, mountain scenery, local artisan workshops, and panoramic views of the Cycladic countryside.

Book a Naxos Private Day Tour

Private guided tour in Naxos featuring traditional mountain villages, ancient temples, local artisan workshops, scenic countryside views, and authentic Greek food experiences.

Book a Milos Secrets of Milos Kayaking Tour

Guided sea kayaking tour in Milos with guests paddling through turquoise waters, exploring volcanic sea caves, swimming at secluded beaches, and enjoying dramatic coastal scenery.

Book a Naxos Private Boat Tour to Antiparos and Blue Lagoon

Private boat cruising between Naxos and Antiparos with guests swimming in the Blue Lagoon, relaxing onboard, and enjoying turquoise waters and scenic Cycladic coastline views.

Book a Naxos Town Food Tour

Walking food tour in Naxos Old Town featuring tastings of local cheese, wine, sweets, and traditional Greek products in narrow Cycladic streets.

Book a Paros Private Boat Tour to Antiparos Town Caves and Blue Lagoon

Private boat cruising between Paros and Antiparos with stops at sea caves and the Blue Lagoon, featuring turquoise waters, snorkeling, and scenic island coastline views.

Book a Santorini Private Custom Tour in a Day

Private tour of Santorini showcasing whitewashed villages, caldera views, volcanic beaches, and scenic island roads explored with a local guide in a luxury vehicle.

Book a Santorini Viator Exclusive Luxury Catamaran Day Tour

Luxury catamaran sailing through Santorini’s caldera with guests swimming in volcanic waters, relaxing onboard, and enjoying panoramic views of cliffs and the Aegean Sea.
Greece Itinerary Creator

How to Get to More Greek Destinations From Here

From the Podcast

The Greece Chats Podcast goes beyond the guidebook. In this episode we sit down with the founder of Hoper to talk about island hopping by helicopter and how it is changing the way people experience Greece.

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