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Getting from Agathonisi to Naxos

If you are heading to Naxos from Agathonisi you are making your way from the northern Dodecanese group to the largest island in the Cyclades, on the opposite side of the Aegean. It has a medieval Venetian town above the port, long sandy beaches on the west coast and a mountainous interior of marble villages.

 

Take the ferry

There is no direct ferry from Agathonisi to Naxos. Getting there means taking the local ferry from Agathonisi to Leros or Samos, flying to Athens and then taking the Piraeus to Naxos ferry, which takes around 3.5 to 5.5 hours with multiple daily departures in summer.

 

Getting there by air

Both Naxos and the nearest airports to Agathonisi have connections from Athens. Taking the local ferry from Agathonisi to Leros or Samos, flying to Athens and then Athens to Naxos, gives a total journey time of around 5 to 6 hours. In Greece, airlines do not operate direct inter island flights.

 

Your best option

Take the local ferry from Agathonisi to Leros or Samos and fly to Athens. From there you can either fly directly to Naxos or take the ferry from Piraeus. The ferry from Piraeus delivers you directly to the port in the centre of Naxos Town and is often more practical than the short flight when you factor in airport transfers.

Discover Activities and Tours

Book a Mykonos Island Tour with Local Guide Driver

Private guided tour in Mykonos showing whitewashed villages, coastal beaches, and panoramic island viewpoints with a local driver exploring scenic routes.

Book a Santorini Private Transportation Service

Private transfer vehicle driving through Santorini’s scenic roads with views of whitewashed villages, volcanic cliffs, and the Aegean coastline.

Book a Santorini Cooking Class and Wine Tasting Experience

Guests preparing traditional Greek recipes in an outdoor Santorini cooking class while enjoying local wine, island views, and a shared meal made with fresh ingredients.

Book a Santorini Luxury Semi Private Sunset Sailing Cruise

Luxury catamaran sailing through the Santorini caldera with guests swimming in crystal-clear waters, enjoying a BBQ dinner onboard, and watching the sunset over the Aegean Sea.

Book a Mykonos Fifth Sense Half Day Private Tour

Private guided tour in Mykonos exploring scenic viewpoints, whitewashed villages, and coastal landscapes with panoramic Aegean Sea views.

Book a Milos and Polyaigos Catamaran Cruise

Catamaran sailing around Milos and Polyaigos with guests swimming in turquoise waters, exploring sea caves, and enjoying panoramic Aegean island views.

Book a Santorini See Everything Private Full Day Tour

Private Santorini island tour showcasing whitewashed villages, blue-domed churches, volcanic beaches, and panoramic caldera views across the island.

Book a Naxos Farm Experience and Wood Fired Cooking Lesson

Guests exploring a traditional Naxian farm and preparing local recipes in a wood-fired oven surrounded by the island’s rural countryside.

Book a Santorini Volcano and Hot Springs Tour

Boat excursion in Santorini sailing across the caldera with views of volcanic islands, hikers exploring lava terrain, and swimmers in natural hot springs.

Book a Milos Catamaran Morning Cruise to Kleftiko with Meals and Snorkeling

Catamaran cruising along Milos coastline toward Kleftiko with guests swimming in turquoise waters, exploring sea caves, and relaxing onboard with scenic volcanic cliffs.
Greece Itinerary Creator

How to Get to More Greek Destinations From Here

From the Podcast

The Greece Chats Podcast goes beyond the guidebook. In this episode we sit down with the founder of Hoper to talk about island hopping by helicopter and how it is changing the way people experience Greece.

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