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Getting from Mykonos to Heraklion

Heraklion is the capital of Crete and the largest city on the island, which means arriving here gives you immediate access to everything. The Palace of Knossos is a short drive from the port, the Archaeological Museum is one of the finest in Greece, the Venetian harbour and fortress are right in the centre of the city and the rest of Crete spreads out in every direction from here. It is a proper city with a real urban energy that surprises people who arrive expecting a quieter island pace.

 

Take the ferry

There is a direct ferry between Mykonos and Heraklion and it is a good option on this route. SeaJets, Fast Ferries and Minoan Lines all operate the crossing through the summer season, with up to 2 daily departures at peak times. The journey takes around 4.5 to 5.5 hours depending on the operator and vessel. The route runs seasonally from April to October so check availability if you are travelling outside those months. Book ahead in summer, this is a popular crossing and seats go fast.

 

What about flying?

Both Mykonos and Heraklion have airports so flying is an option on this route. The journey goes Mykonos to Athens and then Athens to Heraklion, with total travel time around 3 to 4 hours door to door depending on your connection. Heraklion Airport is close to the city centre and well connected year round. For a crossing of this distance the flight and the ferry are comparable in total travel time so it comes down to preference and price.

 

Your best option

If you enjoy the sea the direct ferry is a great way to do this route. The crossing takes you south through the Cyclades and the approach into Heraklion port is a good arrival. If you prefer to fly the Athens connection is straightforward. Either way, arrive into Heraklion with at least two or three days to spend there before heading out to explore the rest of Crete.

Discover Activities and Tours

Book a Private Zeus Cave & Lasithi Plateau Tour for Up to 8 People from Heraklion

Travelers exploring the Lasithi Plateau in Crete, visiting traditional mountain villages and historic windmills, and approaching the entrance to the Cave of Zeus surrounded by dramatic Cretan highland scenery.

Book an EcoBike Tour with Food Tasting in Heraklion

Travelers riding eco-bikes through Heraklion’s historic streets and waterfront, stopping at local eateries to enjoy traditional Cretan food, wine tastings and cultural landmarks along the way.

Book an EcoBike Tour in Historic Heraklion

Travelers cycling eco-bikes through the historic streets of Heraklion, passing Venetian Walls, lively squares and local landmarks while a guide shares stories about the city’s culture and history.

Book an EcoBike Countryside Tour & Olive Oil Factory Experience in Heraklion

Cyclists riding eco-bikes through the Cretan countryside near Heraklion, passing olive groves and traditional villages before visiting a local olive oil factory for a guided tasting experience.

Book a Private Airport Transfer in Chania (Chania Airport ↔ City/Hotel)

A private transfer vehicle waiting outside Chania Airport in Crete, ready to transport travelers to hotels in Chania with comfortable air-conditioned service and luggage assistance.

Book a Cretan Wine Tasting Experience in Heraklion

Guests sampling Cretan wines in a cozy Heraklion tasting room, learning about local grape varieties and enjoying a guided wine experience with glasses of white, rosé and red wine.

Book an EcoBike Wine Tasting Tour in Heraklion

Guests riding electric bikes through the historic streets of Heraklion before enjoying a guided tasting of Cretan wines at a local wine bar, surrounded by Venetian architecture and the vibrant atmosphere of Crete.

Book a Private East Crete Tour to the Cave of Zeus, Agios Nikolaos, Elounda & Spinalonga

Travelers exploring the Cave of Zeus on the Lasithi Plateau, strolling along the waterfront of Agios Nikolaos, admiring Elounda's coastal views and approaching the historic island of Spinalonga by boat on a sunny day in Crete.

Book an Off-Road SxS, UTV & ATV Adventure Tour in Heraklion

Adventure seekers driving ATVs and side-by-side UTVs through the rugged mountains of Heraklion, passing olive groves, dirt trails, traditional Cretan villages and scenic viewpoints under clear blue skies.

Book a VIP Knossos, Lasithi Plateau & Cave of Zeus Private Tour from Heraklion

Travelers exploring the Palace of Knossos ruins, driving through the scenic Lasithi Plateau with its windmills, and descending toward the Cave of Zeus in Crete’s mountainous landscape.
Greece Itinerary Creator

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The Greece Chats Podcast goes beyond the guidebook. In this episode we sit down with the founder of Hoper to talk about island hopping by helicopter and how it is changing the way people experience Greece.

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